org.proteinshader.structure.enums
Enum AAColorEnum

java.lang.Object
  java.lang.Enum<AAColorEnum>
      org.proteinshader.structure.enums.AAColorEnum

All Implemented Interfaces:

Serializable, Comparable<AAColorEnum>

public enum AAColorEnum
extends Enum<AAColorEnum>

Provides an enumeration of an amino acid color scheme.

The amino acid color scheme used here was found at: http://life.nthu.edu.tw/~fmhsu/rasframe/COLORS.HTM

This color scheme is used by RasMol and is based on the amino acid color scheme used in Bob Fletterick's "Shapely Models".

The RGB values are shown below on a 0 to 255 scale, but they are converted to floats on a scale from 0.0 to 1.0 by the private constructor for AAColorEnum.

Enum Constant Summary

BLACK
RGB = (0, 0, 0) for unknown.

BLUE
RGB = (20, 90, 255) for LYS and ARG.

BRIGHT_RED
RGB = (230, 10, 10) for ASP and GLU.

CYAN
RGB = (0, 220, 220) for ASN and GLN.

DARK_GRAY
RGB = (200, 200, 200) for ALA.

GREEN
RGB = (15, 130, 15) for LEU, VAL, and ILE.

LIGHT_GRAY
RGB = (235, 235, 235) for GLY.

MID_BLUE
RGB = (50, 50, 170) for PHE and TYR.

ORANGE
RGB = (250, 150, 0) for SER and THR.

PALE_BLUE
RGB = (130, 130, 210) for HIS.

PEACH
RGB = (220, 150, 130) for PRO.

PINK
RGB = (180, 90, 180) for TRP.

YELLOW
RGB = (230, 230, 0) for CYS and MET.

Method Summary

float	getBlue() Returns the blue component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.
float	getGreen() Returns the green component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.
float	getRed() Returns the red component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.
static AAColorEnum	valueOf(String name) Returns the enum constant of this type with the specified name.
static AAColorEnum[]	values() Returns an array containing the constants of this enum type, in the order they're declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

BRIGHT_RED

public static final AAColorEnum BRIGHT_RED

RGB = (230, 10, 10) for ASP and GLU.

YELLOW

public static final AAColorEnum YELLOW

RGB = (230, 230, 0) for CYS and MET.

BLUE

public static final AAColorEnum BLUE

RGB = (20, 90, 255) for LYS and ARG.

ORANGE

public static final AAColorEnum ORANGE

RGB = (250, 150, 0) for SER and THR.

MID_BLUE

public static final AAColorEnum MID_BLUE

RGB = (50, 50, 170) for PHE and TYR.

CYAN

public static final AAColorEnum CYAN

RGB = (0, 220, 220) for ASN and GLN.

LIGHT_GRAY

public static final AAColorEnum LIGHT_GRAY

RGB = (235, 235, 235) for GLY.

GREEN

public static final AAColorEnum GREEN

RGB = (15, 130, 15) for LEU, VAL, and ILE.

DARK_GRAY

public static final AAColorEnum DARK_GRAY

RGB = (200, 200, 200) for ALA.

PINK

public static final AAColorEnum PINK

RGB = (180, 90, 180) for TRP.

PALE_BLUE

public static final AAColorEnum PALE_BLUE

RGB = (130, 130, 210) for HIS.

PEACH

public static final AAColorEnum PEACH

RGB = (220, 150, 130) for PRO. PEACH has been used to replace the politically incorrect FLESH because of the Crayola Crayon brew-haha.

BLACK

public static final AAColorEnum BLACK

RGB = (0, 0, 0) for unknown.

Method Detail

values

public static final AAColorEnum[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(AAColorEnum c : AAColorEnum.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static AAColorEnum valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

getRed

public float getRed()

Returns the red component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.

Returns:

The red value as a float.

getGreen

public float getGreen()

Returns the green component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.

Returns:

The green value as a float.

getBlue

public float getBlue()

Returns the blue component of the RGBA color as a float in the range from 0.0 to 1.0, inclusive.

Returns:

The blue value as a float.