Package org.proteinshader.structure.io

Holds the classes needed for reading Protein Data Bank structure files.

See:
Description

Interface Summary

StructureReader

StructureReader provides an interface for reading a protein structure from a file.

Class Summary

BetaStrandRecord	This class is used by the PDBLineParser to temporarily store SHEET records.
HelixRecord	This class is used by the PDBLineParser to temporarily store HELIX records.
PDBAtomFieldExtractor	Extracts fields from a PDB ATOM or HETATM record.
PDBBetaStrandFieldExtractor	Extracts fields from a PDB SHEET record.
PDBConnectFieldExtractor	Extracts fields from a PDB CONECT record.
PDBHelixFieldExtractor	Extracts fields from a PDB HELIX record.
PDBLineParser	Parses a line from a PDB file and adds it to a Structure.
PDBStructureReader	This concrete implementation of interface StructureReader reads a protein structure entry from a '.pdb' file formated according to the PDB Contents Guide (Version 2.2, 20 Dec 1996) and creates a Structure.
TubeVertices	Creates the vertices for a segment of a three-dimensional tube by using a waist polygon that approximates a circle as the number of vertices in the waist polygon becomes large.

Package org.proteinshader.structure.io Description

Holds the classes needed for reading Protein Data Bank structure files.

Related Documentation

For help and tutorial pages, please see:

• http://proteinshader.sourceforge.net

Version:

Beta 0.9.4 (December 30, 2008)

Author:

Joseph R. Weber