org.proteinshader.structure.visitor.demos
Class VisitorDemo

java.lang.Object
  org.proteinshader.structure.visitor.demos.VisitorDemo

public class VisitorDemo
extends Object

For testing the traversal logic of the Visitor class.

Creates a Structure object by using the PDBStructureReader class and then tests the ability of the Visitor to traverse all Visitable objects and print each objects ID.

USAGE: java -cp . path/VisitorDemo filename

where path = edu/harvard/fas/jrweber/molecular/structure/visitor

Field Summary

static String	PATH
static String	usageMessage

Constructor Summary

VisitorDemo()
Constructs a VisitorDemo.

Method Summary

static void	main(String[] args) Uses a StructureReader to read a PDB file and create a Structure, and then tests the ability of a Visitor to traverse the Structure.
void	printBadLines(List<String> badLines) Prints the bad lines from the PDB file.
void	testVisitor(Structure structure) Creates a Visitor and tests it by activating debug mode so that it will print the ID of each object in the Structure.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PATH

public static final String PATH

See Also:

Constant Field Values

usageMessage

public static final String usageMessage

See Also:

Constant Field Values

Constructor Detail

VisitorDemo

public VisitorDemo()

Constructs a VisitorDemo.

Method Detail

testVisitor

public void testVisitor(Structure structure)
                 throws VisitorException

Creates a Visitor and tests it by activating debug mode so that it will print the ID of each object in the Structure.

All ResidueMode restrictions are tested.

Parameters:

structure - the Structure to test the Visitor on.

Throws:

VisitorException

printBadLines

public void printBadLines(List<String> badLines)

Prints the bad lines from the PDB file.

Parameters:

badLines - the bad lines to print.

main

public static void main(String[] args)

Uses a StructureReader to read a PDB file and create a Structure, and then tests the ability of a Visitor to traverse the Structure.