Uses of Class
org.proteinshader.structure.BetaStrand

Packages that use BetaStrand

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of BetaStrand in org.proteinshader.structure

Methods in org.proteinshader.structure that return BetaStrand

BetaStrand	Chain.addNewBetaStrand(String betaStrandID, String betaStrandNumber, String sheetID, String startResidueID, String endResidueID, int sense, int strandsInSheet) Creates a new BetaStrand with the BetaStrand ID given as an argument, adds the BetaStrand to the Chain's collection of BetaStrands, and returns a reference to the new BetaStrand.
BetaStrand	Chain.getBetaStrand(String betaStrandID) Returns the BetaStrand with the betaStrandID given as an argument.
BetaStrand	Model.getBetaStrand(String betaStrandID) Returns the BetaStrand with the betaStrandID given as an argument.
BetaStrand	Structure.getBetaStrand(String betaStrandID, String modelID) Returns the BetaStrand with the IDs given as arguments.

Methods in org.proteinshader.structure that return types with arguments of type BetaStrand

Iterator<BetaStrand>	Chain.iteratorBetaStrands() Returns an Iterator for the BetaStrands held by this Chain.
Iterator<BetaStrand>	Model.iteratorBetaStrands() Returns an Iterator for the BetaStrands held by this Model.

Uses of BetaStrand in org.proteinshader.structure.visitor

Methods in org.proteinshader.structure.visitor with parameters of type BetaStrand

void	Visitor.visit(BetaStrand betaStrand) If debug is true, the betaStrandID, startResidueID, and endResidueID will be printed to standard out.
void	SFWriterVisitor.visit(BetaStrand betaStrand) Writes all information held by a BetaStrand.