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See:
Description
| Interface Summary | |
|---|---|
| IDTest | This interface declares a processID() method that is intended to be used as a helper method for constructors that need to perform tests and/or any modifications on an ID. |
| Class Summary | |
|---|---|
| AminoAcid | This concrete subclass of the abstract class Residue stores information on an amino acid in a PDB structure entry. |
| Atom | Extends abstract class Drawable to add data that is unique to an atom (atomID, type, temperature, occupancy, radius, etc.). |
| BetaStrand | This concrete subclass of Region holds information specific to a protein BetaStrand. |
| Bond | Extends abstract class Drawable to add data that is unique to a bond between two atoms. |
| Category | A Category object serves as a container for the Records in a PDB structure entry. |
| Chain | A Chain serves as a container for Residues (AminoAcid, Heterogen, and Water) and Regions (Loop, Helix, and BetaStrand). |
| Description | A Description object serves as a container for the Category objects that hold Records describing a PDB structure entry. |
| Drawable | This abstract class defines attributes and methods that are shared by all drawable objects, including the xyz-coordinates for the Drawable's center and methods that will allow each object to be sorted based on distance from the camera. |
| Helix | This concrete subclass of Region holds information specific to a protein Helix. |
| Heterogen | This concrete subclass of the abstract class Residue stores information on a heterogen in a PDB structure entry. |
| Loop | This concrete subclass of Region holds information on the general "loop" regions found between well-defined regions of secondary structure (helices and beta-strands). |
| Model | A Model serves as a container for one or more Chains. |
| Record | A Record object serves as a container for the lines of a PDB record. |
| Region | Abstract class that contains references to a region of a Chain of AminoAcids. |
| Residue | This abstract class serves as a container for one or more Atoms. |
| Segment | When a protein is drawn as a tube-like structure, a Segment is a length of the tube that corresponds to an AminoAcid. |
| Structure | Structure is the top-level container for objects that store information on a protein structure from the Protein Data Bank. |
| Water | This concrete subclass of the abstract class Residue stores information on a water molecule in a PDB structure entry. |
Holds the classes that store information from a Protein Data Bank file:
Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix,
BetaStrand, Loop, etc.
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