Uses of Class
org.proteinshader.structure.Helix

Packages that use Helix

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of Helix in org.proteinshader.structure

Methods in org.proteinshader.structure that return Helix

Helix	Chain.addNewHelix(String helixID, String serialNo, String startResidueID, String endResidueID, HelixEnum type) Creates a new Helix with the Helix ID given as an argument, adds the Helix to the Chain's collection of Helices, and returns a reference to the new Helix.
Helix	Chain.getHelix(String helixID) Returns the Helix with the helixID given as an argument.
Helix	Model.getHelix(String helixID) Returns the Helix with the helixID given as an argument.
Helix	Structure.getHelix(String helixID, String modelID) Returns the Helix with the IDs given as arguments.

Methods in org.proteinshader.structure that return types with arguments of type Helix

Iterator<Helix>	Chain.iteratorHelices() Returns an Iterator for the Helices held by this Chain.
Iterator<Helix>	Model.iteratorHelices() Returns an Iterator for the Helices held by this Model.

Uses of Helix in org.proteinshader.structure.visitor

Methods in org.proteinshader.structure.visitor with parameters of type Helix

void	Visitor.visit(Helix helix) If debug is true, the helixID, startResidueID, and endResidueID will be printed to standard out.
void	SFWriterVisitor.visit(Helix helix) Writes all information held by a Helix.