Uses of Class
org.proteinshader.structure.Heterogen

Packages that use Heterogen

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of Heterogen in org.proteinshader.structure

Methods in org.proteinshader.structure that return Heterogen

Heterogen	Chain.addNewHeterogen(String name, String residueID) Creates a new Heterogen with the name and Residue ID given as arguments, adds the Heterogen to the Chain's collection of Heterogens, and returns a reference to the new Heterogen.
Heterogen	Chain.getHeterogen(String residueID) Returns the Heterogen with the residueID given as an argument.

Methods in org.proteinshader.structure that return types with arguments of type Heterogen

Iterator<Heterogen>

Chain.iteratorHeterogens() Returns an Iterator for the Heterogens held by this Chain.

Uses of Heterogen in org.proteinshader.structure.visitor

Methods in org.proteinshader.structure.visitor with parameters of type Heterogen

void	Visitor.visit(Heterogen heterogen) Traverses all Atoms owned by the Heterogen.
void	SFWriterVisitor.visit(Heterogen heterogen) Writes all information held by a Heterogen.
void	BondGeneratorVisitor.visit(Heterogen heterogen) NO OPERATION: This method is not needed because non-water heterogen bonds are given explicitly in the PDB structure entry.