Uses of Class
org.proteinshader.structure.Loop

Packages that use Loop

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of Loop in org.proteinshader.structure

Methods in org.proteinshader.structure that return Loop

Loop	Chain.addNewLoop(String loopID, String startResidueID, String endResidueID) Creates a new Loop with the Loop ID given as an argument, adds the Loop to the Chain's collection of Loops, and returns a reference to the new Loop.
Loop	Model.getLoop(String loopID) Returns the Loop with the loopID given as an argument.
Loop	Structure.getLoop(String loopID, String modelID) Returns the Loop with the IDs given as arguments.

Methods in org.proteinshader.structure that return types with arguments of type Loop

Iterator<Loop>	Chain.iteratorLoops() Returns an Iterator for the Loops held by this Chain.
Iterator<Loop>	Model.iteratorLoops() Returns an Iterator for the Loops held by this Model.

Methods in org.proteinshader.structure with parameters of type Loop

void	Model.addLoop(Loop loop) Adds a Loop to the Model.

Uses of Loop in org.proteinshader.structure.visitor

Methods in org.proteinshader.structure.visitor with parameters of type Loop

void	Visitor.visit(Loop loop) If debug is true, the loopID will be printed to standard out.
void	SFWriterVisitor.visit(Loop loop) Writes all information held by a Loop.