Uses of Class
org.proteinshader.structure.Region

Packages that use Region

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.factory	Holds the factory classes needed for generating the Segment objects that hold the information needed for rendering ribbon and tube segments.

Uses of Region in org.proteinshader.structure

Subclasses of Region in org.proteinshader.structure

class	BetaStrand This concrete subclass of Region holds information specific to a protein BetaStrand.
class	Helix This concrete subclass of Region holds information specific to a protein Helix.
class	Loop This concrete subclass of Region holds information on the general "loop" regions found between well-defined regions of secondary structure (helices and beta-strands).

Uses of Region in org.proteinshader.structure.factory

Methods in org.proteinshader.structure.factory with parameters of type Region

LinkedHashMap<String,Segment>	SegmentFactory.createSegments(Region region) Creates the Segment objects for a Region.
LinkedHashMap<String,Segment>	BetaStrandSegmentFactory.createSegments(Region region) After using the superclass createSegments() method, the LocalFrames held by some of the Segment objects will be modified so that beta-strands will have a pleated effect rather than a twisted ribbon appearance.