org.proteinshader.structure.enums
Enum AminoAcidEnum

java.lang.Object
  java.lang.Enum<AminoAcidEnum>
      org.proteinshader.structure.enums.AminoAcidEnum

All Implemented Interfaces:

Serializable, Comparable<AminoAcidEnum>

public enum AminoAcidEnum
extends Enum<AminoAcidEnum>

Provides an enumeration of the amino acids found in protein.

An AminoAcidEnum can be used to obtain a String with the full name of the amino acid, its 3-letter code, or its 1-letter code.

Enum Constant Summary

ALA
Alanine (A) is dark-gray.

ARG
Arginine (R) is blue.

ASN
Asparagine (N) is cyan.

ASP
Aspartic Acid (D) is bright-red.

ASX
ASP/ASN ambiguous (B) uses bright-red for ASP.

CYS
Cysteine (C) is yellow.

GLN
Glutamine (Q) is cyan.

GLU
Glutamic Acid (E) is bright-red.

GLX
GLU/GLN ambiguous (Z) uses bright-red for GLU.

GLY
Glycine (G) is light-gray.

HIS
Histidine (H) is pale-blue.

ILE
Isoleucine (I) is green.

LEU
Leucine (L) is green.

LYS
Lysine (K) is blue.

MET
Methionine (M) is yellow.

PHE
Phenylalanine (F) is mid-blue.

PRO
Proline (P) is peach.

SER
Serine (S) is orange.

THR
Threonine (T) is orange.

TRP
Tryptophan (W) is pink.

TYR
Tyrosine (Y) is mid-blue.

UNK
Unknown (X) is black.

VAL
Valine (V) is green.

Method Summary

float	getAlpha() Returns the alpha component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
float	getBlue() Returns the blue component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
String	getFullName() Returns the full name of the amino acid.
float	getGreen() Returns the green component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
String	getOneLetterCode() Returns the one-letter code for the amino acid.
float	getRed() Returns the red component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
String	getThreeLetterCode() Returns the three-letter code for the amino acid.
static AminoAcidEnum	valueOf(String name) Returns the enum constant of this type with the specified name.
static AminoAcidEnum[]	values() Returns an array containing the constants of this enum type, in the order they're declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

ALA

public static final AminoAcidEnum ALA

Alanine (A) is dark-gray.

ARG

public static final AminoAcidEnum ARG

Arginine (R) is blue.

ASN

public static final AminoAcidEnum ASN

Asparagine (N) is cyan.

ASP

public static final AminoAcidEnum ASP

Aspartic Acid (D) is bright-red.

ASX

public static final AminoAcidEnum ASX

ASP/ASN ambiguous (B) uses bright-red for ASP.

CYS

public static final AminoAcidEnum CYS

Cysteine (C) is yellow.

GLN

public static final AminoAcidEnum GLN

Glutamine (Q) is cyan.

GLU

public static final AminoAcidEnum GLU

Glutamic Acid (E) is bright-red.

GLX

public static final AminoAcidEnum GLX

GLU/GLN ambiguous (Z) uses bright-red for GLU.

GLY

public static final AminoAcidEnum GLY

Glycine (G) is light-gray.

HIS

public static final AminoAcidEnum HIS

Histidine (H) is pale-blue.

ILE

public static final AminoAcidEnum ILE

Isoleucine (I) is green.

LEU

public static final AminoAcidEnum LEU

Leucine (L) is green.

LYS

public static final AminoAcidEnum LYS

Lysine (K) is blue.

MET

public static final AminoAcidEnum MET

Methionine (M) is yellow.

PHE

public static final AminoAcidEnum PHE

Phenylalanine (F) is mid-blue.

PRO

public static final AminoAcidEnum PRO

Proline (P) is peach.

SER

public static final AminoAcidEnum SER

Serine (S) is orange.

THR

public static final AminoAcidEnum THR

Threonine (T) is orange.

TRP

public static final AminoAcidEnum TRP

Tryptophan (W) is pink.

TYR

public static final AminoAcidEnum TYR

Tyrosine (Y) is mid-blue.

UNK

public static final AminoAcidEnum UNK

Unknown (X) is black.

VAL

public static final AminoAcidEnum VAL

Valine (V) is green.

Method Detail

values

public static final AminoAcidEnum[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(AminoAcidEnum c : AminoAcidEnum.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static AminoAcidEnum valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

getFullName

public String getFullName()

Returns the full name of the amino acid. The first letter is in uppercase while the rest of the letters are in lowercase (e.g., Alanine).

Returns:

The full amino acid name as a String.

getThreeLetterCode

public String getThreeLetterCode()

Returns the three-letter code for the amino acid. The code is in lowercase letters. The toString() method will give the three-letter code in uppercase letters.

Returns:

The three-letter amino acid code as a String.

getOneLetterCode

public String getOneLetterCode()

Returns the one-letter code for the amino acid. The letter is uppercase.

Returns:

The one-letter amino acid code as a String.

getRed

public float getRed()

Returns the red component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The red value as a float.

getGreen

public float getGreen()

Returns the green component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The green value as a float.

getBlue

public float getBlue()

Returns the blue component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The blue value as a float.

getAlpha

public float getAlpha()

Returns the alpha component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The alpha value as a float.