org.proteinshader.structure.enums
Enum AtomEnum

java.lang.Object
  java.lang.Enum<AtomEnum>
      org.proteinshader.structure.enums.AtomEnum

All Implemented Interfaces:

Serializable, Comparable<AtomEnum>

public enum AtomEnum
extends Enum<AtomEnum>

Provides an enumeration of atom types: C, H, N, O, S, etc.

Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). The IUPAC periodic table can be found at http://www.chem.qmul.ac.uk/iupac/AtWt/table.html .

Each AtomEnum has a CPK (Corey, Pauling, and Koltun) color assigned to it. The color values (red, green, blue, alpha) are on a scale from 0.0 to 1.0, inclusive.

Enum Constant Summary

AC
Actinium (89)

covalent radius = 1.88
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AG
Silver (47)

covalent radius = 1.59
van der Waals radius = 1.72
CPKColorEnum.DARK_GRAY

AL
Aluminium (13)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

AM
Americium (95)

covalent radius = 1.51
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AR
Argon (18)

covalent radius = 1.51
van der Waals radius = 1.88
CPKColorEnum.DEEP_PINK

AS
Arsenic (33)

covalent radius = 1.21
van der Waals radius = 1.85
CPKColorEnum.DEEP_PINK

AT
Astatine (85)

covalent radius = 1.21
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AU
Gold (79)

covalent radius = 1.50
van der Waals radius = 1.66
CPKColorEnum.GOLDENROD

B
Boron (5)

covalent radius = 0.83
van der Waals radius = 2.00
CPKColorEnum.GREEN

BA
Barium (56)

covalent radius = 1.34
van der Waals radius = 2.00
CPKColorEnum.ORANGE

BE
Beryllium (4)

covalent radius = 0.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BH
Bohrium (107)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BI
Bismuth (83)

covalent radius = 1.54
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BK
Berkelium (97)

covalent radius = 1.54
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BR
Bromine (35)

covalent radius = 1.21
van der Waals radius = 1.85
CPKColorEnum.BROWN

C
Carbon (6)

covalent radius = 0.68
van der Waals radius = 1.70
CPKColorEnum.LIGHT_GRAY

CA
Calcium (20)

covalent radius = 0.99
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

CD
Cadmium (48)

covalent radius = 1.69
van der Waals radius = 1.58
CPKColorEnum.DEEP_PINK

CE
Cerium (58)

covalent radius = 1.83
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CF
Californium (98)

covalent radius = 1.83
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CL
Chlorine (17)

covalent radius = 0.99
van der Waals radius = 1.75
CPKColorEnum.GREEN

CM
Curium (96)

covalent radius = 0.99
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CO
Cobalt (27)

covalent radius = 1.33
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CR
Chromium (24)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

CS
Caesium (55)

covalent radius = 1.67
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CU
Copper (29)

covalent radius = 1.52
van der Waals radius = 1.40
CPKColorEnum.BROWN

DB
Dubnium (105)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

DS
Darmstadtium (110)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

DY
Dysprosium (66)

covalent radius = 1.75
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ER
Erbium (68)

covalent radius = 1.73
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ES
Einsteinium (99)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

EU
Europium (63)

covalent radius = 1.99
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

F
Fluorine (9)

covalent radius = 0.64
van der Waals radius = 1.47
CPKColorEnum.GOLDENROD

FE
Iron (26)

covalent radius = 1.34
van der Waals radius = 2.00
CPKColorEnum.ORANGE

FM
Fermium (100)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

FR
Francium (87)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

GA
Gallium (31)

covalent radius = 1.22
van der Waals radius = 1.87
CPKColorEnum.DEEP_PINK

GD
Gadolinium (64)

covalent radius = 1.79
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

GE
Germanium (32)

covalent radius = 1.17
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

H
Hydrogen (1)

covalent radius = 0.23
van der Waals radius = 1.20
CPKColorEnum.WHITE

HE
Helium (2)


covalent radius = 1.50
van der Waals radius = 1.40
CPKColorEnum.PINK

HF
Hafnium (72)

covalent radius = 1.57
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

HG
Mercury (80)

covalent radius = 1.70
van der Waals radius = 1.55
CPKColorEnum.DEEP_PINK

HO
Holmium (67)

covalent radius = 1.74
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

HS
Hassium (108)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

I
Iodine (53)

covalent radius = 1.40
van der Waals radius = 1.98
CPKColorEnum.PURPLE

IN
Indium (49)

covalent radius = 1.63
van der Waals radius = 1.93
CPKColorEnum.DEEP_PINK

IR
Iridium (77)

covalent radius = 1.32
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

K
Potassium (19)

covalent radius = 1.33
van der Waals radius = 2.75
CPKColorEnum.DEEP_PINK

KR
Krypton (36)

covalent radius = 1.50
van der Waals radius = 2.02
CPKColorEnum.DEEP_PINK

LA
Lanthanum (57)

covalent radius = 1.87
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

LI
Lithium (3)

covalent radius = 0.68
van der Waals radius = 1.82
CPKColorEnum.FIREBRICK

LR
Lawrencium (103)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

LU
Lutetium (71)

covalent radius = 1.72
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MD
Mendelevium (101)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MG
Magnesium (12)

covalent radius = 1.10
van der Waals radius = 1.73
CPKColorEnum.FOREST_GREEN

MN
Manganese (25)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

MO
Molybdenum (42)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MT
Meitnerium (109)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

N
Nitrogen (7)

covalent radius = 0.68
van der Waals radius = 1.55
CPKColorEnum.LIGHT_BLUE

NA
Sodium (11)

covalent radius = 0.97
van der Waals radius = 2.27
CPKColorEnum.BLUE

NB
Niobium (41)

covalent radius = 1.48
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ND
Neodymium (60)

covalent radius = 1.81
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

NE
Neon (10)

covalent radius = 1.50
van der Waals radius = 1.54
CPKColorEnum.DEEP_PINK

NI
Nickel (28)

covalent radius = 1.50
van der Waals radius = 1.63
CPKColorEnum.BROWN

NO
Nobelium (102)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

NP
Neptunium (93)

covalent radius = 1.55
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

O
Oxygen (8)

covalent radius = 0.68
van der Waals radius = 1.52
CPKColorEnum.RED

OS
Osmium (76)

covalent radius = 1.37
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

P
Phosphorus (15)

covalent radius = 1.05
van der Waals radius = 1.80
CPKColorEnum.ORANGE

PA
Protactinium (91)

covalent radius = 1.61
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PB
Lead (82)

covalent radius = 1.54
van der Waals radius = 2.02
CPKColorEnum.DEEP_PINK

PD
Palladium (46)

covalent radius = 1.50
van der Waals radius = 1.63
CPKColorEnum.DEEP_PINK

PM
Promethium (61)

covalent radius = 1.80
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PO
Polonium (84)

covalent radius = 1.68
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PR
Praseodymium (59)

covalent radius = 1.82
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PT
Platinum (78)

covalent radius = 1.50
van der Waals radius = 1.72
CPKColorEnum.DEEP_PINK

PU
Plutonium (94)

covalent radius = 1.53
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RA
Radium (88)

covalent radius = 1.90
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RB
Rubidium (37)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RE
Rhenium (75)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RF
Rutherfordium (104)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RH
Rhodium (45)

covalent radius = 1.45
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RN
Radon (86)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RU
Ruthenium (44)

covalent radius = 1.40
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

S
Sulphur (16)

covalent radius = 1.02
van der Waals radius = 1.80
CPKColorEnum.SULPHUR_YELLOW (also spelled sulfur)

SB
Antimony (51)

covalent radius = 1.46
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SC
Scandium (21)

covalent radius = 1.44
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SE
Selenium (34)

covalent radius = 1.22
van der Waals radius = 1.90
CPKColorEnum.DEEP_PINK

SG
Seaborgium (106)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SI
Silicon (14)

covalent radius = 1.20
van der Waals radius = 2.10
CPKColorEnum.GOLDENROD

SM
Samarium (62)

covalent radius = 1.80
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SN
Tin (50)

covalent radius = 1.46
van der Waals radius = 2.17
CPKColorEnum.DEEP_PINK

SR
Strontium (38)

covalent radius = 1.12
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TA
Tantalum (73)

covalent radius = 1.43
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TB
Terbium (65)

covalent radius = 1.76
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TC
Technetium (43)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TE
Tellurium (52)

covalent radius = 1.47
van der Waals radius = 2.06
CPKColorEnum.DEEP_PINK

TH
Thorium (90)

covalent radius = 1.79
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TI
Titanium (22)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

TL
Thallium (81)

covalent radius = 1.55
van der Waals radius = 1.96
CPKColorEnum.DEEP_PINK

TM
Thulium (69)

covalent radius = 1.72
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

U
Uranium (92)

covalent radius = 1.58
van der Waals radius = 1.86
CPKColorEnum.DEEP_PINK

V
Vanadium (23)

covalent radius = 1.33
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

W
Tungsten (74)

covalent radius = 1.37
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

XE
Xenon (54)

covalent radius = 1.50
van der Waals radius = 2.16
CPKColorEnum.DEEP_PINK

Y
Yttrium (39)

covalent radius = 1.78
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

YB
Ytterbium (70)

covalent radius = 1.94
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ZN
Zinc (30)

covalent radius = 1.45
van der Waals radius = 1.39
CPKColorEnum.BROWN

ZR
Zirconium (40)

covalent radius = 1.56
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

Field Summary

static double

BALL_SCALE The ball radius (for stick-and-ball models) is calculated by multiplying the covalent radius by the BALL_SCALE, which is currently set at 0.2.

Method Summary

float	getAlpha() Returns the alpha component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
int	getAtomicNumber() Returns the atomic number.
double	getBallRadius() Returns a ball radius for use in stick-and-ball type models.
float	getBlue() Returns the blue component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
double	getCovalentRadius() Returns the covalent radius for the Atom, which should be useful for predicting Bonds with other Atoms.
float	getGreen() Returns the green component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
String	getName() Returns the name of the atom.
float	getRed() Returns the red component of the RGBA color on a scale from 0.0 to 1.0, inclusive.
double	getVanDerWaalsRadius() Returns the van der Waals radius for the Atom, which should be useful for representing the Atom as a sphere.
static AtomEnum	valueOf(String name) Returns the enum constant of this type with the specified name.
static AtomEnum[]	values() Returns an array containing the constants of this enum type, in the order they're declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

H

public static final AtomEnum H

Hydrogen (1)

covalent radius = 0.23
van der Waals radius = 1.20
CPKColorEnum.WHITE

HE

public static final AtomEnum HE

Helium (2)


covalent radius = 1.50
van der Waals radius = 1.40
CPKColorEnum.PINK

LI

public static final AtomEnum LI

Lithium (3)

covalent radius = 0.68
van der Waals radius = 1.82
CPKColorEnum.FIREBRICK

BE

public static final AtomEnum BE

Beryllium (4)

covalent radius = 0.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

B

public static final AtomEnum B

Boron (5)

covalent radius = 0.83
van der Waals radius = 2.00
CPKColorEnum.GREEN

C

public static final AtomEnum C

Carbon (6)

covalent radius = 0.68
van der Waals radius = 1.70
CPKColorEnum.LIGHT_GRAY

N

public static final AtomEnum N

Nitrogen (7)

covalent radius = 0.68
van der Waals radius = 1.55
CPKColorEnum.LIGHT_BLUE

O

public static final AtomEnum O

Oxygen (8)

covalent radius = 0.68
van der Waals radius = 1.52
CPKColorEnum.RED

F

public static final AtomEnum F

Fluorine (9)

covalent radius = 0.64
van der Waals radius = 1.47
CPKColorEnum.GOLDENROD

NE

public static final AtomEnum NE

Neon (10)

covalent radius = 1.50
van der Waals radius = 1.54
CPKColorEnum.DEEP_PINK

NA

public static final AtomEnum NA

Sodium (11)

covalent radius = 0.97
van der Waals radius = 2.27
CPKColorEnum.BLUE

MG

public static final AtomEnum MG

Magnesium (12)

covalent radius = 1.10
van der Waals radius = 1.73
CPKColorEnum.FOREST_GREEN

AL

public static final AtomEnum AL

Aluminium (13)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

SI

public static final AtomEnum SI

Silicon (14)

covalent radius = 1.20
van der Waals radius = 2.10
CPKColorEnum.GOLDENROD

P

public static final AtomEnum P

Phosphorus (15)

covalent radius = 1.05
van der Waals radius = 1.80
CPKColorEnum.ORANGE

S

public static final AtomEnum S

Sulphur (16)

covalent radius = 1.02
van der Waals radius = 1.80
CPKColorEnum.SULPHUR_YELLOW (also spelled sulfur)

CL

public static final AtomEnum CL

Chlorine (17)

covalent radius = 0.99
van der Waals radius = 1.75
CPKColorEnum.GREEN

AR

public static final AtomEnum AR

Argon (18)

covalent radius = 1.51
van der Waals radius = 1.88
CPKColorEnum.DEEP_PINK

K

public static final AtomEnum K

Potassium (19)

covalent radius = 1.33
van der Waals radius = 2.75
CPKColorEnum.DEEP_PINK

CA

public static final AtomEnum CA

Calcium (20)

covalent radius = 0.99
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

SC

public static final AtomEnum SC

Scandium (21)

covalent radius = 1.44
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TI

public static final AtomEnum TI

Titanium (22)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

V

public static final AtomEnum V

Vanadium (23)

covalent radius = 1.33
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CR

public static final AtomEnum CR

Chromium (24)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

MN

public static final AtomEnum MN

Manganese (25)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DARK_GRAY

FE

public static final AtomEnum FE

Iron (26)

covalent radius = 1.34
van der Waals radius = 2.00
CPKColorEnum.ORANGE

CO

public static final AtomEnum CO

Cobalt (27)

covalent radius = 1.33
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

NI

public static final AtomEnum NI

Nickel (28)

covalent radius = 1.50
van der Waals radius = 1.63
CPKColorEnum.BROWN

CU

public static final AtomEnum CU

Copper (29)

covalent radius = 1.52
van der Waals radius = 1.40
CPKColorEnum.BROWN

ZN

public static final AtomEnum ZN

Zinc (30)

covalent radius = 1.45
van der Waals radius = 1.39
CPKColorEnum.BROWN

GA

public static final AtomEnum GA

Gallium (31)

covalent radius = 1.22
van der Waals radius = 1.87
CPKColorEnum.DEEP_PINK

GE

public static final AtomEnum GE

Germanium (32)

covalent radius = 1.17
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AS

public static final AtomEnum AS

Arsenic (33)

covalent radius = 1.21
van der Waals radius = 1.85
CPKColorEnum.DEEP_PINK

SE

public static final AtomEnum SE

Selenium (34)

covalent radius = 1.22
van der Waals radius = 1.90
CPKColorEnum.DEEP_PINK

BR

public static final AtomEnum BR

Bromine (35)

covalent radius = 1.21
van der Waals radius = 1.85
CPKColorEnum.BROWN

KR

public static final AtomEnum KR

Krypton (36)

covalent radius = 1.50
van der Waals radius = 2.02
CPKColorEnum.DEEP_PINK

RB

public static final AtomEnum RB

Rubidium (37)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SR

public static final AtomEnum SR

Strontium (38)

covalent radius = 1.12
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

Y

public static final AtomEnum Y

Yttrium (39)

covalent radius = 1.78
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ZR

public static final AtomEnum ZR

Zirconium (40)

covalent radius = 1.56
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

NB

public static final AtomEnum NB

Niobium (41)

covalent radius = 1.48
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MO

public static final AtomEnum MO

Molybdenum (42)

covalent radius = 1.47
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TC

public static final AtomEnum TC

Technetium (43)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RU

public static final AtomEnum RU

Ruthenium (44)

covalent radius = 1.40
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RH

public static final AtomEnum RH

Rhodium (45)

covalent radius = 1.45
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PD

public static final AtomEnum PD

Palladium (46)

covalent radius = 1.50
van der Waals radius = 1.63
CPKColorEnum.DEEP_PINK

AG

public static final AtomEnum AG

Silver (47)

covalent radius = 1.59
van der Waals radius = 1.72
CPKColorEnum.DARK_GRAY

CD

public static final AtomEnum CD

Cadmium (48)

covalent radius = 1.69
van der Waals radius = 1.58
CPKColorEnum.DEEP_PINK

IN

public static final AtomEnum IN

Indium (49)

covalent radius = 1.63
van der Waals radius = 1.93
CPKColorEnum.DEEP_PINK

SN

public static final AtomEnum SN

Tin (50)

covalent radius = 1.46
van der Waals radius = 2.17
CPKColorEnum.DEEP_PINK

SB

public static final AtomEnum SB

Antimony (51)

covalent radius = 1.46
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TE

public static final AtomEnum TE

Tellurium (52)

covalent radius = 1.47
van der Waals radius = 2.06
CPKColorEnum.DEEP_PINK

I

public static final AtomEnum I

Iodine (53)

covalent radius = 1.40
van der Waals radius = 1.98
CPKColorEnum.PURPLE

XE

public static final AtomEnum XE

Xenon (54)

covalent radius = 1.50
van der Waals radius = 2.16
CPKColorEnum.DEEP_PINK

CS

public static final AtomEnum CS

Caesium (55)

covalent radius = 1.67
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BA

public static final AtomEnum BA

Barium (56)

covalent radius = 1.34
van der Waals radius = 2.00
CPKColorEnum.ORANGE

LA

public static final AtomEnum LA

Lanthanum (57)

covalent radius = 1.87
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CE

public static final AtomEnum CE

Cerium (58)

covalent radius = 1.83
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PR

public static final AtomEnum PR

Praseodymium (59)

covalent radius = 1.82
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ND

public static final AtomEnum ND

Neodymium (60)

covalent radius = 1.81
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PM

public static final AtomEnum PM

Promethium (61)

covalent radius = 1.80
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SM

public static final AtomEnum SM

Samarium (62)

covalent radius = 1.80
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

EU

public static final AtomEnum EU

Europium (63)

covalent radius = 1.99
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

GD

public static final AtomEnum GD

Gadolinium (64)

covalent radius = 1.79
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TB

public static final AtomEnum TB

Terbium (65)

covalent radius = 1.76
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

DY

public static final AtomEnum DY

Dysprosium (66)

covalent radius = 1.75
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

HO

public static final AtomEnum HO

Holmium (67)

covalent radius = 1.74
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ER

public static final AtomEnum ER

Erbium (68)

covalent radius = 1.73
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TM

public static final AtomEnum TM

Thulium (69)

covalent radius = 1.72
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

YB

public static final AtomEnum YB

Ytterbium (70)

covalent radius = 1.94
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

LU

public static final AtomEnum LU

Lutetium (71)

covalent radius = 1.72
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

HF

public static final AtomEnum HF

Hafnium (72)

covalent radius = 1.57
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TA

public static final AtomEnum TA

Tantalum (73)

covalent radius = 1.43
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

W

public static final AtomEnum W

Tungsten (74)

covalent radius = 1.37
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RE

public static final AtomEnum RE

Rhenium (75)

covalent radius = 1.35
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

OS

public static final AtomEnum OS

Osmium (76)

covalent radius = 1.37
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

IR

public static final AtomEnum IR

Iridium (77)

covalent radius = 1.32
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PT

public static final AtomEnum PT

Platinum (78)

covalent radius = 1.50
van der Waals radius = 1.72
CPKColorEnum.DEEP_PINK

AU

public static final AtomEnum AU

Gold (79)

covalent radius = 1.50
van der Waals radius = 1.66
CPKColorEnum.GOLDENROD

HG

public static final AtomEnum HG

Mercury (80)

covalent radius = 1.70
van der Waals radius = 1.55
CPKColorEnum.DEEP_PINK

TL

public static final AtomEnum TL

Thallium (81)

covalent radius = 1.55
van der Waals radius = 1.96
CPKColorEnum.DEEP_PINK

PB

public static final AtomEnum PB

Lead (82)

covalent radius = 1.54
van der Waals radius = 2.02
CPKColorEnum.DEEP_PINK

BI

public static final AtomEnum BI

Bismuth (83)

covalent radius = 1.54
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PO

public static final AtomEnum PO

Polonium (84)

covalent radius = 1.68
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AT

public static final AtomEnum AT

Astatine (85)

covalent radius = 1.21
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RN

public static final AtomEnum RN

Radon (86)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

FR

public static final AtomEnum FR

Francium (87)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RA

public static final AtomEnum RA

Radium (88)

covalent radius = 1.90
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AC

public static final AtomEnum AC

Actinium (89)

covalent radius = 1.88
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

TH

public static final AtomEnum TH

Thorium (90)

covalent radius = 1.79
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PA

public static final AtomEnum PA

Protactinium (91)

covalent radius = 1.61
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

U

public static final AtomEnum U

Uranium (92)

covalent radius = 1.58
van der Waals radius = 1.86
CPKColorEnum.DEEP_PINK

NP

public static final AtomEnum NP

Neptunium (93)

covalent radius = 1.55
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

PU

public static final AtomEnum PU

Plutonium (94)

covalent radius = 1.53
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

AM

public static final AtomEnum AM

Americium (95)

covalent radius = 1.51
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CM

public static final AtomEnum CM

Curium (96)

covalent radius = 0.99
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BK

public static final AtomEnum BK

Berkelium (97)

covalent radius = 1.54
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

CF

public static final AtomEnum CF

Californium (98)

covalent radius = 1.83
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

ES

public static final AtomEnum ES

Einsteinium (99)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

FM

public static final AtomEnum FM

Fermium (100)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MD

public static final AtomEnum MD

Mendelevium (101)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

NO

public static final AtomEnum NO

Nobelium (102)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

LR

public static final AtomEnum LR

Lawrencium (103)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

RF

public static final AtomEnum RF

Rutherfordium (104)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

DB

public static final AtomEnum DB

Dubnium (105)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

SG

public static final AtomEnum SG

Seaborgium (106)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

BH

public static final AtomEnum BH

Bohrium (107)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

HS

public static final AtomEnum HS

Hassium (108)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

MT

public static final AtomEnum MT

Meitnerium (109)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

DS

public static final AtomEnum DS

Darmstadtium (110)

covalent radius = 1.50
van der Waals radius = 2.00
CPKColorEnum.DEEP_PINK

Field Detail

BALL_SCALE

public static final double BALL_SCALE

The ball radius (for stick-and-ball models) is calculated by multiplying the covalent radius by the BALL_SCALE, which is currently set at 0.2.

See Also:

Constant Field Values

Method Detail

values

public static final AtomEnum[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(AtomEnum c : AtomEnum.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static AtomEnum valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

getAtomicNumber

public int getAtomicNumber()

Returns the atomic number.

Returns:

The atomic number as an int.

getName

public String getName()

Returns the name of the atom.

Returns:

The name as a String.

getRed

public float getRed()

Returns the red component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The red value as a float.

getGreen

public float getGreen()

Returns the green component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The green value as a float.

getBlue

public float getBlue()

Returns the blue component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The blue value as a float.

getAlpha

public float getAlpha()

Returns the alpha component of the RGBA color on a scale from 0.0 to 1.0, inclusive.

Returns:

The alpha value as a float.

getBallRadius

public double getBallRadius()

Returns a ball radius for use in stick-and-ball type models. The ball radius is the covalent radius multiplied by the BALL_SCALE.

Returns:

The ball radius as a double.

getCovalentRadius

public double getCovalentRadius()

Returns the covalent radius for the Atom, which should be useful for predicting Bonds with other Atoms.

Returns:

The covalent radius as a double.

getVanDerWaalsRadius

public double getVanDerWaalsRadius()

Returns the van der Waals radius for the Atom, which should be useful for representing the Atom as a sphere.

Returns:

The van der Waals radius as a double.