org.proteinshader.gui.components.controlpanel
Class SelectorPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.proteinshader.gui.components.controlpanel.SelectorPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class SelectorPanel
extends JPanel

Provides a panel with menus and lists for selecting a Structure's Models, Chains, Residues, Atoms, Helices, and BetaStrands.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

static int	DIALOG_HEIGHT The height of the Atoms list dialog box.
static int	DIALOG_WIDTH The width of the Atoms list dialog box.
static Font	LIST_FONT The font for lists is 14 point plain Courier.

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SelectorPanel(Mediator mediator, Frame dialogOwner)
Constructs a SelectorPanel.

Method Summary

int	addAtomsToAtomList(Residue residue) Adds all Atoms in the Residue to the Atom list.
void	clearAtoms() Clears the Atom list.
void	clearChains() Clears the Chain menu, Residue list, and Atom list.
void	clearModels() Clears all menus and lists.
void	clearResidues() Clears the Residue list and Atom list.
void	closeAtomListDialog() Sets the Atom list dialog to invisible and enables the "Atoms" button.
Atom	getSelectedAtom() Returns the currently selected Atom from the Atom list.
Atom[]	getSelectedAtoms() Returns an array of the currently selected Atoms from the Atom list.
Chain	getSelectedChain() Returns the currently selected Chain from the Chain menu.
Model	getSelectedModel() Returns the currently selected Model from the Model menu.
Residue	getSelectedResidue() Returns the currently selected Residue from the Residue list.
Residue[]	getSelectedResidues() Returns an array of the currently selected Residues from the Residue list.
ResidueEnum	getSelectedResidueType() Returns the currently selected Residue type from the Residue menu.
void	openAtomListDialog() Sets the Atom list dialog to visible and disables the "Atoms" button.
void	setAtomList(Residue residue) Sets the Atom list for a Residue.
void	setChainMenu(Model model) Adds the Model's Chains to the Chain menu.
void	setModelMenu(Structure structure) Adds the Structure's Models to the Model menu.
void	setResidueList(Chain chain) Checks the currently selected Residue type (AminoAcids, Heterogens, or Waters) and copies them from the Chain to the Residue list.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

LIST_FONT

public static final Font LIST_FONT

The font for lists is 14 point plain Courier.

DIALOG_WIDTH

public static final int DIALOG_WIDTH

The width of the Atoms list dialog box.

See Also:

Constant Field Values

DIALOG_HEIGHT

public static final int DIALOG_HEIGHT

The height of the Atoms list dialog box.

See Also:

Constant Field Values

Constructor Detail

SelectorPanel

public SelectorPanel(Mediator mediator,
                     Frame dialogOwner)

Constructs a SelectorPanel.

Parameters:

mediator - the centralized Mediator that most listeners need to call on to accomplish their task.

dialogOwner - the owner of any Dialogs opened from the SelectorPanel (or null if there is no requested owner).

Method Detail

getSelectedModel

public Model getSelectedModel()

Returns the currently selected Model from the Model menu.

Returns:

The currently selected Model.

getSelectedChain

public Chain getSelectedChain()

Returns the currently selected Chain from the Chain menu.

Returns:

The currently selected Chain.

getSelectedResidueType

public ResidueEnum getSelectedResidueType()

Returns the currently selected Residue type from the Residue menu.

Returns:

The currently selected Residue type as an ResidueEnum.

getSelectedResidue

public Residue getSelectedResidue()

Returns the currently selected Residue from the Residue list. If there are multiple Residues selected, this method returns only the first. If there are no Residues selected, null is returned.

Returns:

The currently selected Residue.

getSelectedResidues

public Residue[] getSelectedResidues()

Returns an array of the currently selected Residues from the Residue list. If no Residues are selected, the array will have a length of zero.

Returns:

The currently selected Residues as an array.

getSelectedAtom

public Atom getSelectedAtom()

Returns the currently selected Atom from the Atom list. If there are multiple Atoms selected, this method returns only the first. If there are no Atoms selected, null is returned.

Returns:

The currently selected Atom.

getSelectedAtoms

public Atom[] getSelectedAtoms()

Returns an array of the currently selected Atoms from the Atom list. If no Atoms are selected, the array will have a length of zero.

Returns:

The currently selected Atoms as an array.

setModelMenu

public void setModelMenu(Structure structure)

Adds the Structure's Models to the Model menu. The first Model will be set selected. If Structure is null or has no Models, then the Model menu will be blank and the number of Models will be shown as 0.

Parameters:

structure - the Structure holding the Models to add to the menu.

setChainMenu

public void setChainMenu(Model model)

Adds the Model's Chains to the Chain menu. The first Chain will be set selected. If Model is null or has no Chains, then the Chain menu will be blank and the number of Chains will be shown as 0.

Parameters:

model - the Model holding the Chains to add to the menu.

setResidueList

public void setResidueList(Chain chain)

Checks the currently selected Residue type (AminoAcids, Heterogens, or Waters) and copies them from the Chain to the Residue list. The list will be empty if the Chain does not have any of the requested type of Residue.

Parameters:

chain - the Chain holding the Residues to add to the Residue list.

setAtomList

public void setAtomList(Residue residue)

Sets the Atom list for a Residue.

Parameters:

residue - the Chain holding the Residues to add to the Residue list.

openAtomListDialog

public void openAtomListDialog()

Sets the Atom list dialog to visible and disables the "Atoms" button.

closeAtomListDialog

public void closeAtomListDialog()

Sets the Atom list dialog to invisible and enables the "Atoms" button.

clearModels

public void clearModels()

Clears all menus and lists. Any labels reporting the number of items in a menu or list is set to zero.

clearChains

public void clearChains()

Clears the Chain menu, Residue list, and Atom list.

clearResidues

public void clearResidues()

Clears the Residue list and Atom list.

clearAtoms

public void clearAtoms()

Clears the Atom list.

addAtomsToAtomList

public int addAtomsToAtomList(Residue residue)

Adds all Atoms in the Residue to the Atom list. The label with the number of Atoms will be updated, and the total number of items now in the list will be returned.

Parameters:

residue - the Residue holding the Atoms.

Returns:

The total number of items in the Atom list.