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Packages that use IDTest | |
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org.proteinshader.structure | Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc. |
Uses of IDTest in org.proteinshader.structure |
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Classes in org.proteinshader.structure that implement IDTest | |
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AminoAcid
This concrete subclass of the abstract class Residue stores information on an amino acid in a PDB structure entry. |
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Atom
Extends abstract class Drawable to add data that is unique to an atom (atomID, type, temperature, occupancy, radius, etc.). |
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BetaStrand
This concrete subclass of Region holds information specific to a protein BetaStrand. |
class |
Chain
A Chain serves as a container for Residues (AminoAcid, Heterogen, and Water) and Regions (Loop, Helix, and BetaStrand). |
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Helix
This concrete subclass of Region holds information specific to a protein Helix. |
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Heterogen
This concrete subclass of the abstract class Residue stores information on a heterogen in a PDB structure entry. |
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Loop
This concrete subclass of Region holds information on the general "loop" regions found between well-defined regions of secondary structure (helices and beta-strands). |
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Model
A Model serves as a container for one or more Chains. |
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Region
Abstract class that contains references to a region of a Chain of AminoAcids. |
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Residue
This abstract class serves as a container for one or more Atoms. |
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Structure
Structure is the top-level container for objects that store information on a protein structure from the Protein Data Bank. |
class |
Water
This concrete subclass of the abstract class Residue stores information on a water molecule in a PDB structure entry. |
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