Uses of Class
org.proteinshader.structure.enums.HelixEnum

Packages that use HelixEnum

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.enums	Holds the enums needed by org.proteinshader.structure and its subpackages.
org.proteinshader.structure.io	Holds the classes needed for reading Protein Data Bank structure files.

Uses of HelixEnum in org.proteinshader.structure

Fields in org.proteinshader.structure declared as HelixEnum

static HelixEnum

Helix.DEFAULT_TYPE The default Helix type is RH_ALPHA.

Methods in org.proteinshader.structure that return HelixEnum

HelixEnum

Helix.getType() Returns the type of Helix.

Methods in org.proteinshader.structure with parameters of type HelixEnum

Helix	Chain.addNewHelix(String helixID, String serialNo, String startResidueID, String endResidueID, HelixEnum type) Creates a new Helix with the Helix ID given as an argument, adds the Helix to the Chain's collection of Helices, and returns a reference to the new Helix.
void	Structure.addNewHelix(String chainID, String helixID, String serialNo, String startResidueID, String endResidueID, HelixEnum type) The Helix will be added to the equivalent Chain on each Model, but this addition will only work if the sequence of Residues that the Helix refers to have already been added.
void	Model.addNewHelix(String chainID, String helixID, String serialNo, String startResidueID, String endResidueID, HelixEnum type) The Helix will be added to the Chain only if the sequence of Residues that the Helix refers to has already been added.
void	Helix.setType(HelixEnum type) Sets the type of Helix.

Constructors in org.proteinshader.structure with parameters of type HelixEnum

Helix(String helixID, String serialNo, String startResidueID, String endResidueID, Chain chain, HelixEnum type, HelixShapeEnum shape)
Constructs a Helix.

Uses of HelixEnum in org.proteinshader.structure.enums

Methods in org.proteinshader.structure.enums that return HelixEnum

static HelixEnum	HelixEnum.valueOf(int pdbClassNo) Returns the HelixEnum corresponding to the PDB classification number given as an argument.
static HelixEnum	HelixEnum.valueOf(String name) Returns the enum constant of this type with the specified name.
static HelixEnum[]	HelixEnum.values() Returns an array containing the constants of this enum type, in the order they're declared.

Uses of HelixEnum in org.proteinshader.structure.io

Methods in org.proteinshader.structure.io that return HelixEnum

HelixEnum	PDBHelixFieldExtractor.extractType(String line) Extracts the helix type from (helixClass field: 39-40).
HelixEnum	HelixRecord.getType() Returns the type of Helix.

Constructors in org.proteinshader.structure.io with parameters of type HelixEnum

HelixRecord(String chainID, String helixID, String serialNo, String startResidueID, String endResidueID, HelixEnum type)
Constructs a HelixRecord.