Uses of Interface
org.proteinshader.structure.visitor.Visitable

Packages that use Visitable

org.proteinshader.structure

Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.

Uses of Visitable in org.proteinshader.structure

Classes in org.proteinshader.structure that implement Visitable

class	AminoAcid This concrete subclass of the abstract class Residue stores information on an amino acid in a PDB structure entry.
class	Atom Extends abstract class Drawable to add data that is unique to an atom (atomID, type, temperature, occupancy, radius, etc.).
class	BetaStrand This concrete subclass of Region holds information specific to a protein BetaStrand.
class	Bond Extends abstract class Drawable to add data that is unique to a bond between two atoms.
class	Chain A Chain serves as a container for Residues (AminoAcid, Heterogen, and Water) and Regions (Loop, Helix, and BetaStrand).
class	Drawable This abstract class defines attributes and methods that are shared by all drawable objects, including the xyz-coordinates for the Drawable's center and methods that will allow each object to be sorted based on distance from the camera.
class	Helix This concrete subclass of Region holds information specific to a protein Helix.
class	Heterogen This concrete subclass of the abstract class Residue stores information on a heterogen in a PDB structure entry.
class	Loop This concrete subclass of Region holds information on the general "loop" regions found between well-defined regions of secondary structure (helices and beta-strands).
class	Model A Model serves as a container for one or more Chains.
class	Region Abstract class that contains references to a region of a Chain of AminoAcids.
class	Residue This abstract class serves as a container for one or more Atoms.
class	Segment When a protein is drawn as a tube-like structure, a Segment is a length of the tube that corresponds to an AminoAcid.
class	Structure Structure is the top-level container for objects that store information on a protein structure from the Protein Data Bank.
class	Water This concrete subclass of the abstract class Residue stores information on a water molecule in a PDB structure entry.