Uses of Class
org.proteinshader.structure.visitor.Visitor

Packages that use Visitor

org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of Visitor in org.proteinshader.structure

Methods in org.proteinshader.structure with parameters of type Visitor

void	AminoAcid.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Water.accept(Visitor visitor) Accepts a Visitor and does a callback.
abstract void	Drawable.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Segment.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Structure.accept(Visitor visitor) Accepts a Visitor and does a callback.
abstract void	Residue.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Chain.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Model.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Helix.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Atom.accept(Visitor visitor) Accepts a Visitor and does a callback.
abstract void	Region.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	BetaStrand.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Loop.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Bond.accept(Visitor visitor) Accepts a Visitor and does a callback.
void	Heterogen.accept(Visitor visitor) Accepts a Visitor and does a callback.

Uses of Visitor in org.proteinshader.structure.visitor

Subclasses of Visitor in org.proteinshader.structure.visitor

class	AminoAcidLabelVisitor Traverses the AminoAcids of a Structure and builds a non-redundant list of residueIDs.
class	BondDestroyerVisitor Removes Bonds on all Atoms that it visits.
class	BondGeneratorVisitor Generates standard Bonds for AminoAcids and Waters.
class	BoundsVisitor Knows how to find the min and max xyz-coordinate values for all Atoms in each Model.
class	FrenetFrameGeneratorVisitor Calculates a discrete Frenet frame for each AminoAcid visited.
class	LoopGeneratorVisitor Generates Loop objects from any AminoAcids of a Chain that do not already belong to a Helix or BetaStrand.
class	ModifierVisitor Knows how to modify multiple Drawable objects while traversing the hierarchy of objects contained in a Structure.
class	SFWriterVisitor A simple file writer subclass of Visitor that writes to a file all of the data from each Model in a Structure.
class	VisibilityVisitor Knows how to traverse the Structure object hierarchy and find all visible Drawable objects.

Methods in org.proteinshader.structure.visitor with parameters of type Visitor

void	Visitable.accept(Visitor visitor) Accepts a Vistor so that a call back can be done.