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| Packages that use MissingHetNameException | |
|---|---|
| org.proteinshader.structure | Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc. |
| Uses of MissingHetNameException in org.proteinshader.structure |
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| Methods in org.proteinshader.structure that throw MissingHetNameException | |
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Atom |
Structure.addNewHetAtom(int atomSerialNo,
AtomEnum atomType,
String atomID,
String hetName,
String residueID,
String chainID,
String modelID,
double temperature,
int charge,
double occupancy,
String altLocation,
double x,
double y,
double z,
VisibilityEnum visibility)
Creates a new atom with the atomID given as an argument, adds the new Atom to the requested Model-Chain-(Heterogen or Water), and then returns a reference to the new Atom. |
Heterogen |
Chain.addNewHeterogen(String name,
String residueID)
Creates a new Heterogen with the name and Residue ID given as arguments, adds the Heterogen to the Chain's collection of Heterogens, and returns a reference to the new Heterogen. |
| Constructors in org.proteinshader.structure that throw MissingHetNameException | |
|---|---|
Heterogen(String name,
String residueID,
String chainID,
String modelID,
String structureID)
Creates a Heterogen with the name and IDs given as arguments (after adding the HETEROGEN_PREFIX ("HET_") to the beginning of residueID). |
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