Uses of Class
org.proteinshader.structure.Drawable

Packages that use Drawable

org.proteinshader.graphics.adapter	Holds the StructureToGraphics class, which is used to manage the use of the drawing classes and OpenGL display lists.
org.proteinshader.gui.viewing	Holds important helper classes that the Renderer uses to control the view: Camera, Rotation, Lighting, etc.
org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.sort	Holds the DrawableSorter class, which is needed for sorting Drawable objects based on their distance from the camera.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.
org.proteinshader.structure.visitor.modifiers	Holds helper classes for the ModifierVisitor class, which is used to modify Drawable objects (Atoms, Bonds, and Segments).

Uses of Drawable in org.proteinshader.graphics.adapter

Methods in org.proteinshader.graphics.adapter with parameters of type Drawable

void	StructureToGraphics.draw(GL gl, Drawable d) Determines if a Drawable object is an Atom, Bond, or Segment, and then calls on the appropriate draw() method.

Uses of Drawable in org.proteinshader.gui.viewing

Methods in org.proteinshader.gui.viewing with parameters of type Drawable

double	Camera.calculateDepth(Drawable d) Calculates the depth (z-coordinate in camera space) of the xyz-center of the Drawable object.
double	Camera.calculateDistance(Drawable d) Calculates the distance between the camera and the xyz-center of the Drawable object by using the Pythagorean theorem.

Uses of Drawable in org.proteinshader.structure

Subclasses of Drawable in org.proteinshader.structure

class	Atom Extends abstract class Drawable to add data that is unique to an atom (atomID, type, temperature, occupancy, radius, etc.).
class	Bond Extends abstract class Drawable to add data that is unique to a bond between two atoms.
class	Segment When a protein is drawn as a tube-like structure, a Segment is a length of the tube that corresponds to an AminoAcid.

Methods in org.proteinshader.structure that return Drawable

Drawable[]	Model.getOpaqueAtomsAndBonds() Copies the list of opaque Atoms and Bonds into an array and returns the array.
Drawable[]	Model.getTranslucentDrawables() Copies the list of translucent Drawables into an array and returns the array.

Methods in org.proteinshader.structure with parameters of type Drawable

double	Drawable.distance(Drawable other) Returns the distance in angstroms between the xyz-center of the calling Drawable object and the xyz-center of the Drawable object given as an argument.
Vec3d	Drawable.minus(Drawable other) Returns a vector created by subtracting the xyz-center of the Drawable given as an argument from the xyz-center of the calling Drawable object.

Uses of Drawable in org.proteinshader.structure.sort

Methods in org.proteinshader.structure.sort with parameters of type Drawable

void	DrawableSorter.ascendingMergeSort(Drawable[] d) Sorts an array of Drawable objects in ascending order based on camera distance.

Uses of Drawable in org.proteinshader.structure.visitor

Method parameters in org.proteinshader.structure.visitor with type arguments of type Drawable

void	VisibilityVisitor.setListsToFill(List<Segment> opaqueSegments, List<Drawable> opaqueAtomsAndBonds, List<Drawable> translucentList) Sets the lists to place opaque and translucent Drawable objects in.
void	VisibilityVisitor.setListsToFill(List<Segment> opaqueSegments, List<Drawable> opaqueAtomsAndBonds, List<Drawable> translucentList) Sets the lists to place opaque and translucent Drawable objects in.

Uses of Drawable in org.proteinshader.structure.visitor.modifiers

Methods in org.proteinshader.structure.visitor.modifiers with parameters of type Drawable

void	DrawableModifier.modify(Drawable d) Modifies the visibility, RGBA color, and/or radius of the Drawable object given as an argument.