Uses of Package
org.proteinshader.math

Packages that use org.proteinshader.math

org.proteinshader.graphics	Holds the drawing classes: Ribbon, Tube, FrenetFrames, Sphere, and Cylinder.
org.proteinshader.gui.viewing	Holds important helper classes that the Renderer uses to control the view: Camera, Rotation, Lighting, etc.
org.proteinshader.math	The key classes in this package are Hermite and Quaternion, which are needed for generating the ribbons and tubes that are used to represent the backbone of a protein in a cartoon-type display.
org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.io	Holds the classes needed for reading Protein Data Bank structure files.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Classes in org.proteinshader.math used by org.proteinshader.graphics

LocalFrame
Stores a local coordinate frame as a rotation (a Quaternion) and a translation (a Point3d).

Classes in org.proteinshader.math used by org.proteinshader.gui.viewing

Vec3d
This class is used to create a vector with 3 elements of type double.

Classes in org.proteinshader.math used by org.proteinshader.math

Hermite
Calculates a cubic equation between two control points so that points on the curve in between can be interpolated.

LocalFrame
Stores a local coordinate frame as a rotation (a Quaternion) and a translation (a Point3d).

Point3d
This class is used to create a point with 3 elements of type double.

Quaternion
This class is used to create a quaternion, a four-dimensional complex number that is typically used to represent a rotation in three-dimensional space.

Vec3d
This class is used to create a vector with 3 elements of type double.

Classes in org.proteinshader.math used by org.proteinshader.structure

Hermite
Calculates a cubic equation between two control points so that points on the curve in between can be interpolated.

LocalFrame
Stores a local coordinate frame as a rotation (a Quaternion) and a translation (a Point3d).

Point3d
This class is used to create a point with 3 elements of type double.

Quaternion
This class is used to create a quaternion, a four-dimensional complex number that is typically used to represent a rotation in three-dimensional space.

Vec3d
This class is used to create a vector with 3 elements of type double.

Classes in org.proteinshader.math used by org.proteinshader.structure.io

LocalFrame
Stores a local coordinate frame as a rotation (a Quaternion) and a translation (a Point3d).

Classes in org.proteinshader.math used by org.proteinshader.structure.visitor

Quaternion
This class is used to create a quaternion, a four-dimensional complex number that is typically used to represent a rotation in three-dimensional space.