Uses of Class
org.proteinshader.structure.Model

Packages that use Model

org.proteinshader.graphics.adapter	Holds the StructureToGraphics class, which is used to manage the use of the drawing classes and OpenGL display lists.
org.proteinshader.graphics.displaylists	Holds the classes needed to manage OpenGL display lists, which are used to cache reusable geometry for spheres, cylinders, ribbon segments, and tube segments.
org.proteinshader.gui	Holds all of the Swing GUI components and their associated listeners, including class Renderer, which is registered as a listener for the GLCanvas object that is used a drawing surface.
org.proteinshader.gui.components.controlpanel	Holds the JPanels used in the right-side retractable control panel of the GUI.
org.proteinshader.structure	Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc.
org.proteinshader.structure.visitor	Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure.

Uses of Model in org.proteinshader.graphics.adapter

Methods in org.proteinshader.graphics.adapter with parameters of type Model

void	StructureToGraphics.cacheSegmentGeometry(GL gl, Model model, StyleEnum style) Calls on the SegmentReferences object to cache OpenGL display lists for the Segments of the current Model.

Uses of Model in org.proteinshader.graphics.displaylists

Methods in org.proteinshader.graphics.displaylists with parameters of type Model

void	SegmentReferences.cacheSegmentGeometry(GL gl, Model model, StyleEnum style) Caches an OpenGL display list for each Segment of each Region object in the Model.

Uses of Model in org.proteinshader.gui

Methods in org.proteinshader.gui that return Model

Model	MediatorImpl.getCurrentModel() Returns the current Model.
Model	Mediator.getCurrentModel() Returns the current Model.

Methods in org.proteinshader.gui with parameters of type Model

void	MediatorImpl.setCurrentModel(Model model) Sets the current Model.
void	Mediator.setCurrentModel(Model model) Sets the current Model.
void	Renderer.setVisibleDrawables(Model model, StyleEnum style) An array of opaque Segments, and array of opaque Atoms and Bonds, and an array of translucent Drawable objects will be obtained from the Model.

Uses of Model in org.proteinshader.gui.components.controlpanel

Methods in org.proteinshader.gui.components.controlpanel that return Model

Model

SelectorPanel.getSelectedModel() Returns the currently selected Model from the Model menu.

Methods in org.proteinshader.gui.components.controlpanel with parameters of type Model

void	SelectorPanel.setChainMenu(Model model) Adds the Model's Chains to the Chain menu.

Uses of Model in org.proteinshader.structure

Methods in org.proteinshader.structure that return Model

Model	Structure.addNewModel(String modelID) Creates a Model, adds it to the Structure, and returns a reference to the new Model.
Model	Structure.getModel(String modelID) Returns the Model with the modelID given as an argument.

Methods in org.proteinshader.structure that return types with arguments of type Model

Iterator<Model>

Structure.iteratorModels() Returns an Iterator for the Models held by this Structure.

Uses of Model in org.proteinshader.structure.visitor

Methods in org.proteinshader.structure.visitor with parameters of type Model

void	Visitor.visit(Model model) Traverses all Chains owned by the Model.
void	SFWriterVisitor.visit(Model model) Writes all information held by a Model.
void	BoundsVisitor.visit(Model model) Finds the min and max values for x, y, and z of the Model and then calls setter methods on the Model so that these values are remembered.
void	LoopGeneratorVisitor.visit(Model model) Generates all Loop objects needed by the Model.
void	BondGeneratorVisitor.visit(Model model) Generates all standard Bonds (AminoAcids and Waters) for the Model.