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| Packages that use org.proteinshader.structure.enums | |
|---|---|
| org.proteinshader.graphics | Holds the drawing classes: Ribbon, Tube, FrenetFrames, Sphere, and Cylinder. |
| org.proteinshader.graphics.typography | Holds the classes needed for applying text labels to the curved surfaces of tubes and ribbons. |
| org.proteinshader.gui.components.controlpanel | Holds the JPanels used in the right-side retractable control panel of the GUI. |
| org.proteinshader.structure | Holds the classes that store information from a Protein Data Bank file: Structure, Model, Chain, AminoAcid, Heterogen, Water, Atom, Bond, Helix, BetaStrand, Loop, etc. |
| org.proteinshader.structure.enums | Holds the enums needed by org.proteinshader.structure and its subpackages. |
| org.proteinshader.structure.exceptions | Holds the exception classes needed by org.proteinshader.structure and its subpackages. |
| org.proteinshader.structure.io | Holds the classes needed for reading Protein Data Bank structure files. |
| org.proteinshader.structure.visitor | Holds Visitor classes that know how to traverse the hierarchy of objects held by class Structure. |
| org.proteinshader.structure.visitor.modifiers | Holds helper classes for the ModifierVisitor class, which is used to modify Drawable objects (Atoms, Bonds, and Segments). |
| Classes in org.proteinshader.structure.enums used by org.proteinshader.graphics | |
|---|---|
| RegionEnum
Provides a Region type enumeration (Loop, Helix, or BetaStrand) useful for marking AminoAcids. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.graphics.typography | |
|---|---|
| RegionEnum
Provides a Region type enumeration (Loop, Helix, or BetaStrand) useful for marking AminoAcids. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.gui.components.controlpanel | |
|---|---|
| DecorationEnum
Provides an enumeration to specify if a Segment object should be plain, with text labels, or with halftoning when the Segment is rendered as a three-dimensional tube or ribbon. |
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| ResidueEnum
Provides an enumeration that can be used to restrict a Visitor to traversing only a particular Residue type. |
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| SideChainEnum
Provides an enumeration to specify how an amino acid side chain should be displayed is it is shown in combination with a tube or ribbon segment. |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
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| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure | |
|---|---|
| AminoAcidEnum
Provides an enumeration of the amino acids found in protein. |
|
| AtomEnum
Provides an enumeration of atom types: C, H, N, O, S, etc. Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). |
|
| BondEnum
Provides an enumeration for molecular bonds. |
|
| DecorationEnum
Provides an enumeration to specify if a Segment object should be plain, with text labels, or with halftoning when the Segment is rendered as a three-dimensional tube or ribbon. |
|
| DrawableEnum
Provides an enumeration to specify if a Drawable object is an Atom, Bond, or Segment. |
|
| HelixEnum
Provides an enumeration of the helix types specified in the Protein Data Bank . |
|
| HelixShapeEnum
Lists the possible shapes that can be used to represent a Helix. |
|
| RegionEnum
Provides a Region type enumeration (Loop, Helix, or BetaStrand) useful for marking AminoAcids. |
|
| SideChainEnum
Provides an enumeration to specify how an amino acid side chain should be displayed is it is shown in combination with a tube or ribbon segment. |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure.enums | |
|---|---|
| AAColorEnum
Provides an enumeration of an amino acid color scheme. |
|
| AminoAcidEnum
Provides an enumeration of the amino acids found in protein. |
|
| AtomEnum
Provides an enumeration of atom types: C, H, N, O, S, etc. Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). |
|
| BondEnum
Provides an enumeration for molecular bonds. |
|
| CPKColorEnum
Provides an enumeration of the CPK color scheme that is needed by AtomEnum. |
|
| DecorationEnum
Provides an enumeration to specify if a Segment object should be plain, with text labels, or with halftoning when the Segment is rendered as a three-dimensional tube or ribbon. |
|
| DrawableEnum
Provides an enumeration to specify if a Drawable object is an Atom, Bond, or Segment. |
|
| HelixEnum
Provides an enumeration of the helix types specified in the Protein Data Bank . |
|
| HelixShapeEnum
Lists the possible shapes that can be used to represent a Helix. |
|
| RegionColorEnum
PrProvides default colors for regions of protein secondary structure (alpha-helices, beta-strands and general loop regions). |
|
| RegionEnum
Provides a Region type enumeration (Loop, Helix, or BetaStrand) useful for marking AminoAcids. |
|
| ResidueEnum
Provides an enumeration that can be used to restrict a Visitor to traversing only a particular Residue type. |
|
| SideChainEnum
Provides an enumeration to specify how an amino acid side chain should be displayed is it is shown in combination with a tube or ribbon segment. |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure.exceptions | |
|---|---|
| AtomEnum
Provides an enumeration of atom types: C, H, N, O, S, etc. Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure.io | |
|---|---|
| AtomEnum
Provides an enumeration of atom types: C, H, N, O, S, etc. Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). |
|
| HelixEnum
Provides an enumeration of the helix types specified in the Protein Data Bank . |
|
| RegionEnum
Provides a Region type enumeration (Loop, Helix, or BetaStrand) useful for marking AminoAcids. |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure.visitor | |
|---|---|
| AminoAcidEnum
Provides an enumeration of the amino acids found in protein. |
|
| AtomEnum
Provides an enumeration of atom types: C, H, N, O, S, etc. Includes the periodic table of the elements from hydrogen (atomic number 1) to roentgenium (atomic number 111). |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
|
| Classes in org.proteinshader.structure.enums used by org.proteinshader.structure.visitor.modifiers | |
|---|---|
| DecorationEnum
Provides an enumeration to specify if a Segment object should be plain, with text labels, or with halftoning when the Segment is rendered as a three-dimensional tube or ribbon. |
|
| SideChainEnum
Provides an enumeration to specify how an amino acid side chain should be displayed is it is shown in combination with a tube or ribbon segment. |
|
| VisibilityEnum
Provides an enumeration to specify if a Drawable object is opaque, translucent, or invisible. |
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