Hierarchy For All Packages

Package Hierarchies:

org.proteinshader.graphics, org.proteinshader.graphics.adapter, org.proteinshader.graphics.displaylists, org.proteinshader.graphics.enums, org.proteinshader.graphics.exceptions, org.proteinshader.graphics.shader, org.proteinshader.graphics.textures, org.proteinshader.graphics.typography, org.proteinshader.graphics.utils, org.proteinshader.gui, org.proteinshader.gui.components, org.proteinshader.gui.components.controlpanel, org.proteinshader.gui.components.menubar, org.proteinshader.gui.enums, org.proteinshader.gui.exceptions, org.proteinshader.gui.listeners, org.proteinshader.gui.listeners.controlpanel, org.proteinshader.gui.listeners.menubar, org.proteinshader.gui.utils, org.proteinshader.gui.viewing, org.proteinshader.math, org.proteinshader.structure, org.proteinshader.structure.enums, org.proteinshader.structure.exceptions, org.proteinshader.structure.factory, org.proteinshader.structure.io, org.proteinshader.structure.io.demos, org.proteinshader.structure.io.enums, org.proteinshader.structure.io.exceptions, org.proteinshader.structure.io.filters, org.proteinshader.structure.sort, org.proteinshader.structure.visitor, org.proteinshader.structure.visitor.demos, org.proteinshader.structure.visitor.enums, org.proteinshader.structure.visitor.exceptions, org.proteinshader.structure.visitor.modifiers

Class Hierarchy

• java.lang.Object
  • org.proteinshader.gui.listeners.menubar.AboutBoxListenerFactory
  • org.proteinshader.gui.listeners.controlpanel.AntialiasingPanelListenerFactory
  • org.proteinshader.gui.listeners.menubar.BackgroundMenuListenerFactory
  • org.proteinshader.structure.io.BetaStrandRecord
  • org.proteinshader.structure.visitor.BondPredictor
  • org.proteinshader.gui.viewing.Camera
  • org.proteinshader.gui.listeners.CanvasKeyListener (implements java.awt.event.KeyListener)
  • org.proteinshader.gui.listeners.controlpanel.CartoonSideChainsPanelListenerFactory
  • org.proteinshader.structure.Category
  • org.proteinshader.structure.io.enums.CategoryEnumDemo
  • org.proteinshader.structure.Chain (implements org.proteinshader.structure.IDTest, org.proteinshader.structure.visitor.Visitable)
  • org.proteinshader.gui.listeners.controlpanel.ColorPanelListenerFactory
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • org.proteinshader.gui.components.menubar.BackgroundMenu
              • org.proteinshader.gui.components.menubar.FileMenu
              • org.proteinshader.gui.components.menubar.HelpMenu
              • org.proteinshader.gui.components.menubar.OrientationMenu
              • org.proteinshader.gui.components.menubar.StyleMenu
              • org.proteinshader.gui.components.menubar.ToolsMenu
              • org.proteinshader.gui.components.menubar.VisibilityMenu
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • org.proteinshader.gui.utils.ImageFileChooser
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer, java.io.Serializable)
            • org.proteinshader.gui.utils.CenteredListCellRenderer
            • org.proteinshader.gui.utils.PaddedListCellRenderer
            • org.proteinshader.gui.utils.SeparatorListCellRenderer
        • javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • org.proteinshader.gui.components.menubar.MainMenuBar
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.proteinshader.gui.components.controlpanel.AntialiasingPanel
          • org.proteinshader.gui.components.controlpanel.AtomScalePanel
          • org.proteinshader.gui.components.controlpanel.CartoonSideChainsPanel
          • org.proteinshader.gui.components.controlpanel.ColorPanel
            • org.proteinshader.gui.components.controlpanel.AtomColorPanel
            • org.proteinshader.gui.components.controlpanel.CartoonColorPanel
          • org.proteinshader.gui.components.controlpanel.ControlPanel
          • org.proteinshader.gui.components.controlpanel.DecorationsPanel
          • org.proteinshader.gui.components.controlpanel.ModifierPanel
          • org.proteinshader.gui.components.controlpanel.MotionPanel
          • org.proteinshader.gui.components.controlpanel.OptimizePanel
          • org.proteinshader.gui.components.controlpanel.RadioPanel
          • org.proteinshader.gui.components.controlpanel.SelectorPanel
          • org.proteinshader.gui.components.controlpanel.VisibilityPanel
            • org.proteinshader.gui.components.controlpanel.AtomVisibilityPanel
            • org.proteinshader.gui.components.controlpanel.CartoonVisibilityPanel
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.proteinshader.gui.components.menubar.AboutBox
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.proteinshader.gui.ProteinShaderGUI
            • org.proteinshader.gui.components.SpringLoadedJFrame (implements java.awt.event.ComponentListener, java.awt.event.WindowListener)
  • org.proteinshader.graphics.displaylists.CylinderReferences
  • org.proteinshader.gui.listeners.controlpanel.DecorationsPanelListenerFactory
  • org.proteinshader.structure.Description
  • org.proteinshader.structure.Drawable (implements org.proteinshader.structure.visitor.Visitable)
    • org.proteinshader.structure.Atom (implements org.proteinshader.structure.IDTest)
    • org.proteinshader.structure.Bond
    • org.proteinshader.structure.Segment
  • org.proteinshader.structure.visitor.modifiers.DrawableModifier
    • org.proteinshader.structure.visitor.modifiers.AtomModifier
    • org.proteinshader.structure.visitor.modifiers.BondModifier
    • org.proteinshader.structure.visitor.modifiers.SegmentModifier
  • org.proteinshader.structure.sort.DrawableSorter
  • org.proteinshader.graphics.textures.EqualSignConfigReader (implements org.proteinshader.graphics.textures.ConfigReader)
  • javax.swing.filechooser.FileFilter
    • org.proteinshader.gui.utils.FileExtensionFilter
    • org.proteinshader.structure.io.filters.PDBFileFilter
  • org.proteinshader.gui.listeners.menubar.FileMenuListenerFactory
  • org.proteinshader.gui.utils.FpsLabel
  • org.proteinshader.graphics.displaylists.GeometricListInfo
    • org.proteinshader.graphics.displaylists.CylinderListInfo
    • org.proteinshader.graphics.displaylists.SegmentListInfo
    • org.proteinshader.graphics.displaylists.SphereListInfo
  • org.proteinshader.graphics.typography.GLF2GlyphSetFactory (implements org.proteinshader.graphics.typography.GlyphSetFactory)
  • org.proteinshader.graphics.typography.GLF2Header
  • org.proteinshader.graphics.typography.Glyph
  • org.proteinshader.graphics.typography.GlyphDemo
  • org.proteinshader.graphics.typography.GlyphSet
  • org.proteinshader.graphics.typography.GlyphSetFactoryFactory
  • org.proteinshader.structure.io.HelixRecord
  • org.proteinshader.gui.listeners.menubar.HelpMenuListenerFactory
  • org.proteinshader.math.Hermite
  • org.proteinshader.math.HermiteDemo
  • org.proteinshader.gui.viewing.Lighting
  • org.proteinshader.math.LocalFrame
  • org.proteinshader.math.LocalFrameDemo
  • org.proteinshader.gui.MediatorImpl (implements org.proteinshader.gui.Mediator)
  • org.proteinshader.structure.Model (implements org.proteinshader.structure.IDTest, org.proteinshader.structure.visitor.Visitable)
  • org.proteinshader.gui.listeners.controlpanel.ModifierPanelListenerFactory
  • org.proteinshader.structure.visitor.demos.ModifierVisitorDemo
  • org.proteinshader.gui.listeners.controlpanel.MotionPanelListenerFactory
  • javax.swing.event.MouseInputAdapter (implements javax.swing.event.MouseInputListener)
    • org.proteinshader.gui.listeners.CanvasMouseListener (implements java.awt.event.MouseWheelListener)
  • org.proteinshader.graphics.textures.NamePair
  • org.proteinshader.gui.listeners.controlpanel.OptimizePanelListenerFactory
  • org.proteinshader.gui.listeners.menubar.OrientationMenuListenerFactory
  • org.proteinshader.structure.io.PDBAtomFieldExtractor
  • org.proteinshader.structure.io.PDBBetaStrandFieldExtractor
  • org.proteinshader.structure.io.PDBConnectFieldExtractor
  • org.proteinshader.structure.io.PDBHelixFieldExtractor
  • org.proteinshader.structure.io.PDBLineParser
  • org.proteinshader.structure.io.PDBStructureReader (implements org.proteinshader.structure.io.StructureReader)
  • org.proteinshader.structure.io.demos.PDBStructureReaderDemo
  • org.proteinshader.math.Point3d (implements java.lang.Cloneable)
  • org.proteinshader.gui.ProteinShader
  • org.proteinshader.gui.ProteinShaderSplasher
  • org.proteinshader.math.Quaternion (implements java.lang.Cloneable)
  • org.proteinshader.math.QuaternionDemo
  • org.proteinshader.gui.listeners.controlpanel.RadioPanelListenerFactory
  • org.proteinshader.structure.Record
  • org.proteinshader.structure.io.enums.RecordEnumDemo
  • org.proteinshader.structure.Region (implements org.proteinshader.structure.IDTest, org.proteinshader.structure.visitor.Visitable)
    • org.proteinshader.structure.BetaStrand
    • org.proteinshader.structure.Helix
    • org.proteinshader.structure.Loop
  • org.proteinshader.gui.Renderer (implements javax.media.opengl.GLEventListener)
  • org.proteinshader.structure.Residue (implements org.proteinshader.structure.IDTest, org.proteinshader.structure.visitor.Visitable)
    • org.proteinshader.structure.AminoAcid
    • org.proteinshader.structure.Heterogen
    • org.proteinshader.structure.Water
  • org.proteinshader.gui.viewing.Rotation
  • org.proteinshader.gui.listeners.controlpanel.ScalePanelListenerFactory
  • org.proteinshader.gui.viewing.ScreenShot
  • org.proteinshader.structure.io.demos.SegmentDemo
  • org.proteinshader.structure.factory.SegmentFactory
    • org.proteinshader.structure.factory.BetaStrandSegmentFactory
  • org.proteinshader.graphics.displaylists.SegmentReferences
  • org.proteinshader.graphics.utils.SegmentRenderer
  • org.proteinshader.gui.listeners.controlpanel.SelectorPanelListenerFactory
  • org.proteinshader.graphics.shader.ShaderManager
  • org.proteinshader.graphics.shader.ShaderProgram
  • org.proteinshader.graphics.shader.ShaderProgramFactory
  • org.proteinshader.graphics.Shape
    • org.proteinshader.graphics.Cylinder
    • org.proteinshader.graphics.ExtrudedShape
      • org.proteinshader.graphics.FrenetFrames
      • org.proteinshader.graphics.Ribbon
      • org.proteinshader.graphics.Tube
    • org.proteinshader.graphics.Sphere
  • org.proteinshader.graphics.Silhouette
  • org.proteinshader.math.SlerpDemo
  • org.proteinshader.graphics.displaylists.SphereReferences
  • org.proteinshader.structure.Structure (implements org.proteinshader.structure.IDTest, org.proteinshader.structure.visitor.Visitable)
  • org.proteinshader.graphics.adapter.StructureToGraphics
  • org.proteinshader.gui.listeners.menubar.StyleMenuListenerFactory
  • org.proteinshader.graphics.typography.TextLabel
  • org.proteinshader.graphics.typography.TextLabelFactory
  • org.proteinshader.graphics.typography.TextLabelManager
  • org.proteinshader.graphics.textures.Texture (implements java.lang.Comparable<T>)
  • org.proteinshader.graphics.textures.TextureFactory
  • org.proteinshader.graphics.textures.TextureManager
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.proteinshader.structure.exceptions.BondLengthException
      • org.proteinshader.structure.exceptions.ColorOutOfRangeException
      • org.proteinshader.graphics.exceptions.GlyphException
        • org.proteinshader.graphics.exceptions.GlyphConfigException
        • org.proteinshader.graphics.exceptions.GlyphImageException
      • org.proteinshader.structure.exceptions.InvalidIDException
      • org.proteinshader.structure.exceptions.InvalidRegionException
      • org.proteinshader.structure.exceptions.MissingAATypeException
      • org.proteinshader.structure.exceptions.MissingAtomTypeException
      • org.proteinshader.structure.exceptions.MissingHetNameException
      • org.proteinshader.structure.io.exceptions.PDBFieldExtractorException
      • org.proteinshader.structure.io.exceptions.PDBLineParserException
      • org.proteinshader.gui.exceptions.ScreenShotException
      • org.proteinshader.structure.exceptions.SegmentException
      • org.proteinshader.graphics.exceptions.ShaderException
      • org.proteinshader.structure.io.exceptions.StructureReaderException
      • org.proteinshader.graphics.exceptions.TextureException
      • org.proteinshader.structure.visitor.exceptions.VisitorException
        • org.proteinshader.structure.visitor.exceptions.WriterVisitorException
  • org.proteinshader.gui.listeners.menubar.ToolsMenuListenerFactory
  • org.proteinshader.structure.io.TubeVertices
  • org.proteinshader.math.Vec3d (implements java.lang.Cloneable)
  • org.proteinshader.math.VectorAndPointDemo
  • org.proteinshader.gui.listeners.menubar.VisibilityMenuListenerFactory
  • org.proteinshader.gui.listeners.controlpanel.VisibilityPanelListenerFactory
  • org.proteinshader.structure.visitor.Visitor
    • org.proteinshader.structure.visitor.AminoAcidLabelVisitor
    • org.proteinshader.structure.visitor.BondDestroyerVisitor
    • org.proteinshader.structure.visitor.BondGeneratorVisitor
    • org.proteinshader.structure.visitor.BoundsVisitor
    • org.proteinshader.structure.visitor.FrenetFrameGeneratorVisitor
    • org.proteinshader.structure.visitor.LoopGeneratorVisitor
    • org.proteinshader.structure.visitor.ModifierVisitor
    • org.proteinshader.structure.visitor.SFWriterVisitor
    • org.proteinshader.structure.visitor.VisibilityVisitor
  • org.proteinshader.structure.visitor.demos.VisitorDemo
  • org.proteinshader.gui.listeners.WindowListenerFactory

Interface Hierarchy

• org.proteinshader.graphics.textures.ConfigReader
• org.proteinshader.graphics.typography.GlyphSetFactory
• org.proteinshader.structure.IDTest
• org.proteinshader.gui.Mediator
• org.proteinshader.structure.io.StructureReader
• org.proteinshader.structure.visitor.Visitable

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.proteinshader.graphics.enums.ShaderEnum
    • org.proteinshader.gui.components.controlpanel.RadioPanel.Type
    • org.proteinshader.gui.enums.JitterEnum
    • org.proteinshader.gui.enums.StyleEnum
    • org.proteinshader.gui.enums.ImageFormatEnum
    • org.proteinshader.gui.enums.RadioButtonEnum
    • org.proteinshader.gui.enums.OrientationEnum
    • org.proteinshader.gui.listeners.CanvasMouseListener.Mode
    • org.proteinshader.structure.enums.RegionEnum
    • org.proteinshader.structure.enums.HelixShapeEnum
    • org.proteinshader.structure.enums.ResidueEnum
    • org.proteinshader.structure.enums.DecorationEnum
    • org.proteinshader.structure.enums.AAColorEnum
    • org.proteinshader.structure.enums.HelixEnum
    • org.proteinshader.structure.enums.DrawableEnum
    • org.proteinshader.structure.enums.VisibilityEnum
    • org.proteinshader.structure.enums.BondEnum
    • org.proteinshader.structure.enums.SideChainEnum
    • org.proteinshader.structure.enums.AminoAcidEnum
    • org.proteinshader.structure.enums.AtomEnum
    • org.proteinshader.structure.enums.RegionColorEnum
    • org.proteinshader.structure.enums.CPKColorEnum
    • org.proteinshader.structure.io.enums.CategoryEnum
    • org.proteinshader.structure.io.enums.RecordEnum
    • org.proteinshader.structure.visitor.enums.AAPortionMode
    • org.proteinshader.structure.visitor.enums.ResidueMode
    • org.proteinshader.structure.visitor.enums.RegionMode